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Welcome
API Documentation
- Configuration
- Categories
- modules
  - betcrop
    
    betcrop_antsbet
    betcrop_fslbetcrop
    betcrop_synthbet
  - bundle
    
    bundle_centroid
    bundle_coloring
    bundle_fixelafd
    bundle_labelmap
    bundle_recognize
    bundle_stats
    bundle_uniformize
  - connectivity
    
    connectivity_afdfixel
    connectivity_decompose
    connectivity_visualize
  - denoising
    
    denoising_mppca
    denoising_nlmeans
  - image
    
    image_applymask
    image_burnvoxels
    image_convert
    image_cropvolume
    image_powderaverage
    image_resample
  - io
    
    io_nii2dcm
    io_readbids
  - mqc
    
    mqc_gif
  - preproc
    
    preproc_eddy
    preproc_gibbs
    preproc_n4
    preproc_normalize
    preproc_topup
  - reconst
    
    reconst_diffusivitypriors
    reconst_dtimetrics
    reconst_fodf
    reconst_freewater
    reconst_frf
    reconst_ihmt
    reconst_meanfrf
    reconst_noddi
    reconst_qball
    reconst_shmetrics
    reconst_shsignal
  - registration
    
    registration_anattodwi
    registration_ants
    registration_antsapplytransforms
    registration_convert
    registration_easyreg
    registration_synthregistration
    registration_tractogram
  - segmentation
    
    segmentation_fastseg
    segmentation_fastsurfer
    segmentation_freesurferseg
    segmentation_fslobes
    segmentation_fsreconall
    segmentation_synthseg
  - stats
    
    stats_mergejson
    stats_metricsinroi
  - tracking
    
    tracking_localtracking
    tracking_pfttracking
  - tractogram
    
    tractogram_densitymap
    tractogram_math
    tractogram_removeinvalid
    tractogram_resample
  - utils
    
    utils_extractb0
    utils_templateflow
- subworkflows
Create your pipeline
- Setup your computer
- Tutorial
How-to
- Nextflow
  - Top-5 Operators
  - Custom Subworkflows
- VSCode
  - Data in devcontainers
  - Nextflow support
- Lineage
  - Software versioning
Advanced Tutorials
Contribute to nf-neuro
- Setup your computer
- Create your module
- Create your subworkflow
- Continuous Integration
  - Test data infrastructure
  - Resources for testing
Pipelines using nf-neuro
- nf-pediatric

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