Uniformize streamlines’ endpoints according to a defined axis. Useful for tractometry or models creation.
Keywords : uniformize, Bundles, endpoints, tractometry
| Type | Description | Mandatory | Pattern |
|---|
| meta | map | Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ] | true | |
| bundles | file | Bundle or list of bundles to uniformize. | true | *.trk |
| centroids | file | Match endpoints of the streamlines to align it to a reference unique streamline (centroid). (optional) | false | *.trk |
Outputs
| Type | Description | Pattern |
|---|
| meta | map | Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ] | |
| versions | file | File containing software versions | versions.yml |
| bundles | file | Bundle or list of bundles uniformized. | *.trk |
| Type | Description | Default | Choices |
|---|
| method | string | - “axis {x,y,z}” Match endpoints of the streamlines along this axis. SUGGESTION: Commissural = x, Association = y, Projection = z - “centroid”: Match endpoints of the streamlines to align it to a reference unique streamline (centroid). - “auto”: Match endpoints of the streamlines along an automatically determined axis. | auto | |
| swap | boolean | Swap head <-> tail convention. Can be useful when the reference is not in RAS. | False | |
| Description | DOI |
|---|
| scilpy | The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox. | |
Authors
ThoumyreStanislas
Maintainers
ThoumyreStanislas
Last updated : 2025-07-15
