stats_mergejson

Allows you to fuse JSON with different merging possibilities.

Keywords : scilpy, stats, JSON, xlsx, merge

Inputs

Format : tuple val(meta), path(jsons)

	Type	Description	Mandatory	Pattern
meta	map	Groovy Map containing sample information e.g. `[ id:'test', single_end:false ]`	True
jsons	file	set of json to merge together.	True	`*.json`

Format : tuple val(meta), path(*_stats.json)

	Type	Description	Mandatory	Pattern
meta	map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`	True
*_stats.json	file	json containing all merged jsons.	True	`*_stats.json`

Format : tuple val(meta), path(*_stats.xlsx)

	Type	Description	Mandatory	Pattern
meta	map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`	True
*_stats.xlsx	file	xlsx containing all merged jsons.	True	`*_stats.xlsx`

Format : path(versions.yml)

	Type	Description	Mandatory	Pattern
versions.yml	file	File containing software versions.	True	`versions.yml`

	Type	Description	Default
prefix	string	defines the prefix of output files.
suffix	string	It will add an extra string before “_stats.json”	_stats
per_point	boolean	If set, will perform a first operation to remove parent key from all files.	False
average_last_layer	boolean	If set, will average all entries (scalar) at the lowest layers, but instead of creating a list it creates a mean/std level.	False
recursive	boolean	If set, will merge all entries (scalar) at the lowest layers as a list.	False
no_list	boolean	If set, will merge all entries at the top level, if there is a conflict the lowest level will be extended with the new values (if list) or added (if value).	False
stats_over_population	boolean	If set, consider the input stats to be over an entire population and not subject-based.	False

	Description	DOI
scilpy	The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox.

Last updated : 2025-10-30