bundle_fixelafd
Compute mean apparent fiber density (AFD) and mean radial fODF (radfODF) maps along a bundle.
Keywords : DWI, AFD, Fixel
Inputs
Section titled “Inputs”Input 1
Section titled “Input 1”Format : tuple val(meta), val(bundles), path(fodf)
| Type | Description | Mandatory | Pattern | |
|---|---|---|---|---|
| meta | map | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] | True | |
| bundles | list | List of bundles in .trk format. | True | *.trk |
| fodf | file | fODF file to extract fixel measurements from. | True | *.nii.gz |
Outputs
Section titled “Outputs”fixel_afd
Section titled “fixel_afd”Format : tuple val(meta), val(*_afd_metric.nii.gz)
| Type | Description | Mandatory | Pattern | |
|---|---|---|---|---|
| meta | map | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] | True | |
| *_afd_metric.nii.gz | list | Mean Apparent Fiber Density (AFD) along the bundle. | True | *_afd_metric.nii.gz |
versions
Section titled “versions”Format : path(versions.yml)
| Type | Description | Mandatory | Pattern | |
|---|---|---|---|---|
| versions.yml | file | File containing software versions | True | versions.yml |
| Description | DOI | |
|---|---|---|
| scilpy | The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox. |
Authors
Section titled “Authors”Last updated : 2025-10-30