fixelafd

Module: bundle/fixelafd

USE scilpy to compute mean apparent fiber density (AFD) and mean radial radial fODF (radfODF) maps along a bundle.

Inputs

	Type	Description	Mandatory	Pattern
meta	map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]	true
bundles	list	List of bundles in .trk format.	true	*.trk
fodf	file	fODF file to extract fixel measurements from.	true	*.nii.gz

Outputs

	Type	Description	Pattern
meta	map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
fixel_afd	list	Mean Apparent Fiber Density (AFD) along the bundle.	*_afd_metric.nii.gz
versions	file	File containing software versions	versions.yml

Tools

	Description	Homepage	DOI
Scilpy	The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox.	https://github.com/scilus/scilpy.git

Authors

@grahamlittlephd