fixelafd
Module: bundle/fixelafd
USE scilpy to compute mean apparent fiber density (AFD) and mean radial radial fODF (radfODF) maps along a bundle.
Keywords : DWI, AFD, Fixel
Inputs
| Type | Description | Mandatory | Pattern | |
|---|---|---|---|---|
| meta | map | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] | true | |
| bundles | list | List of bundles in .trk format. | true | *.trk |
| fodf | file | fODF file to extract fixel measurements from. | true | *.nii.gz |
Outputs
| Type | Description | Pattern | |
|---|---|---|---|
| meta | map | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] | |
| fixel_afd | list | Mean Apparent Fiber Density (AFD) along the bundle. | *_afd_metric.nii.gz |
| versions | file | File containing software versions | versions.yml |
Tools
| Description | DOI | |
|---|---|---|
| Scilpy | The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox. |
Authors
Last updated : 2025-07-15