ants

Module: registration/ants

Image registration with antsRegistrationSyN or antsRegistrationSyNQuick

Keywords : nifti, registration, antsRegistrationSyN, antsRegistrationSyNQuick, trk

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Inputs

	Type	Description	Mandatory	Pattern
meta	map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]	true
fixedimage	file	Fixed image(s) or source image(s) or reference image(s)		*.{nii,nii.gz}
movingimage	file	Moving image(s) or target image(s)		*.{nii,nii.gz}
mask	file	Mask(s) for the fixed image space		*.{nii,nii.gz}

Outputs

	Type	Description	Pattern
meta	map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
image	file	Nifti volume after registration.	*_warped.nii.gz
transfo_image	list	Tuple, Transformation files to warp images (nii Warp, mat file)	*.{nii,nii.gz,mat}
transfo_trk	list	Tuple, Transformation files to warp trk (nii InverseWarp, mat file)	*.{nii,nii.gz,mat}
mqc	file	.gif file containing quality control image for the registration process. Made for use in MultiQC report.	*.gif
versions	file	File containing software versions	versions.yml

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Tools

	Description	DOI
ants	Advanced Normalization Tools.

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Authors

ThoumyreStanislas

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Last updated : 2025-07-15