registration_ants
Image registration with antsRegistrationSyN or antsRegistrationSyNQuick
Keywords : nifti, registration, SyN, SyNQuick, trk
Inputs
Section titled “Inputs”Input 1
Section titled “Input 1”Format : tuple val(meta), path(fixedimage), path(movingimage), path(mask)
| Type | Description | Mandatory | Pattern | |
|---|---|---|---|---|
| meta | map | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] | True | |
| fixedimage | file | Fixed image(s) or source image(s) or reference image(s) | True | *.{nii,nii.gz} |
| movingimage | file | Moving image(s) or target image(s) | True | *.{nii,nii.gz} |
| mask | file | Mask(s) for the fixed image space | True | *.{nii,nii.gz} |
Outputs
Section titled “Outputs”Format : tuple val(meta), path(*_warped.nii.gz)
| Type | Description | Mandatory | Pattern | |
|---|---|---|---|---|
| meta | map | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] | True | |
| *_warped.nii.gz | file | Nifti volume after registration. | True | *_warped.nii.gz |
affine
Section titled “affine”Format : tuple val(meta), path(*__output0GenericAffine.mat)
| Type | Description | Mandatory | Pattern | |
|---|---|---|---|---|
| meta | map | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] | True | |
| *__output0GenericAffine.mat | file | Affine transformation from moving to fixed | True | *__output0GenericAffine.mat |
inverse_affine
Section titled “inverse_affine”Format : tuple val(meta), path(*__output1InverseAffine.mat)
| Type | Description | Mandatory | Pattern | |
|---|---|---|---|---|
| meta | map | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] | True | |
| *__output1InverseAffine.mat | file | Affine transformation from fixed to moving | True | *__output1InverseAffine.mat |
Format : tuple val(meta), path(*__output1Warp.nii.gz)
| Type | Description | Mandatory | Pattern | |
|---|---|---|---|---|
| meta | map | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] | True | |
| *__output1Warp.nii.gz | file | Nifti volume containing warp field from moving to fixed | True | *__output1Warp.nii.gz |
inverse_warp
Section titled “inverse_warp”Format : tuple val(meta), path(*__output0InverseWarp.nii.gz)
| Type | Description | Mandatory | Pattern | |
|---|---|---|---|---|
| meta | map | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] | True | |
| *__output0InverseWarp.nii.gz | file | Nifti volume containing warp field from fixed to moving | True | *__output0InverseWarp.nii.gz |
Format : tuple val(meta), path(*_registration_ants_mqc.gif)
| Type | Description | Mandatory | Pattern | |
|---|---|---|---|---|
| meta | map | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] | True | |
| *_registration_ants_mqc.gif | file | .gif file containing quality control image for the registration process. Made for use in MultiQC report. | True | *_registration_ants_mqc.gif |
versions
Section titled “versions”Format : path(versions.yml)
| Type | Description | Mandatory | Pattern | |
|---|---|---|---|---|
| versions.yml | file | File containing software versions | True | versions.yml |
| Description | DOI | |
|---|---|---|
| ANTs | Advanced Normalization Tools (ANTs) for image processing. | 10.1038/s41598-021-87564-6 |
Authors
Section titled “Authors”Last updated : 2025-10-30