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readbids

Module: io/readbids

Module reading bids specification for an input folder.

Keywords : Bids, Input, Structure


Inputs

TypeDescriptionMandatoryPattern
bids_folderdirectoryFolder containing bids file*
fs_folderdirectoryFolder containing fs file*
bids_ignorefilebids_ignore file*.{bids_ignore}

Outputs

TypeDescriptionPattern
versionsfileFile containing software versionsversions.yml
bidsstructurefilejson file containing tractoflow bids structure*.{json}

Arguments (see process.ext)

TypeDescriptionDefaultChoices
readoutfloatReadout time to add in metadata.0.062
clean_bidsbooleanIf set to true, will remove participants with missing files from the final BIDS layout.False

Tools

DescriptionDOI
scilpyThe Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox.

Authors

harshana2011


Last updated : 2025-07-15