registration_anattodwi
Anatomical image registration on a diffusion image.
Keywords : nifti, registration, anatomical, dwi
Inputs
Section titled “Inputs”Input 1
Section titled “Input 1”Format : tuple val(meta), path(t1), path(b0), path(metric)
| Type | Description | Mandatory | Pattern | |
|---|---|---|---|---|
| meta | map | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] | True | |
| t1 | file | Nifti image file to register on dwi | True | *.{nii,nii.gz} |
| b0 | file | Nifti image file - b0 | True | *.{nii,nii.gz} |
| metric | file | Nifti image file metric used to register (fa) | True | *.{nii,nii.gz} |
Outputs
Section titled “Outputs”affine
Section titled “affine”Format : tuple val(meta), path(*0GenericAffine.mat)
| Type | Description | Mandatory | Pattern | |
|---|---|---|---|---|
| meta | map | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] | True | |
| *0GenericAffine.mat | file | Affine transformation matrix. | True | *0GenericAffine.mat |
Format : tuple val(meta), path(*1Warp.nii.gz)
| Type | Description | Mandatory | Pattern | |
|---|---|---|---|---|
| meta | map | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] | True | |
| *1Warp.nii.gz | file | Warp field. | True | *1Warp.{nii,nii.gz} |
inverse_warp
Section titled “inverse_warp”Format : tuple val(meta), path(*1InverseWarp.nii.gz)
| Type | Description | Mandatory | Pattern | |
|---|---|---|---|---|
| meta | map | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] | True | |
| *1InverseWarp.nii.gz | file | Inverse warp field. | True | *1InverseWarp.{nii,nii.gz} |
t1_warped
Section titled “t1_warped”Format : tuple val(meta), path(*t1_warped.nii.gz)
| Type | Description | Mandatory | Pattern | |
|---|---|---|---|---|
| meta | map | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] | True | |
| *t1_warped.nii.gz | file | Anatomical T1 warped to dwi space. | True | *t1_warped.{nii,nii.gz} |
Format : tuple val(meta), path(*_registration_anattodwi_mqc.gif)
| Type | Description | Mandatory | Pattern | |
|---|---|---|---|---|
| meta | map | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] | True | |
| *_registration_anattodwi_mqc.gif | file | .gif file containing quality control image for the registration process. For use in MultiQC report. | True | *_registration_anattodwi_mqc.gif |
versions
Section titled “versions”Format : path(versions.yml)
| Type | Description | Mandatory | Pattern | |
|---|---|---|---|---|
| versions.yml | file | File containing software versions | True | versions.yml |
| Description | DOI | |
|---|---|---|
| ANTs | Advanced Normalization Tools (ANTs) for image processing. | 10.1038/s41598-021-87564-6 |
Authors
Section titled “Authors”Last updated : 2025-10-30