visualize
Module: connectivity/visualize
display a connectivity matrix and adjust the desired visualization.
Keywords : numpy, connectivity, visualize, scilpy
Inputs
| Type | Description | Mandatory | Pattern | |
|---|---|---|---|---|
| meta | map | Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ] | true | |
| matrices | file | List of connectivity matrices. the set of matrices is concatenated into a single matrix, but can also contain a single matrix. | *.npy | |
| atlas_labels | file | Lookup table with the label number as keys and the name as values | *.json | |
| labels_list | file | List saved by the decomposition script, must contain labels rather than coordinates. | *.txt |
Outputs
| Type | Description | Pattern | |
|---|---|---|---|
| meta | map | Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ] | |
| figure | file | Output filename for the connectivity matrix figure. | *.png |
| versions | file | File containing software versions | versions.yml |
Tools
| Description | DOI | |
|---|---|---|
| scilpy | The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox. |
Authors
Maintainers
Last updated : 2025-07-15