nlmeans

Module: denoising/nlmeans

denoise a dataset with the Non Local Means algorithm

Inputs

	Type	Description	Mandatory	Pattern
meta	map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]	true
image	file	Nifti image file to denoise	true	*.{nii,nii.gz}
mask	file	Nifti image file used to mask the input image	false	*.{nii,nii.gz}

Arguments

	Type	Description	Choices	Default
ncoils	int	Number of coils used for the acquisition		1

Outputs

	Type	Description	Pattern
meta	map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
image	file	Denoised Nifti image file	*_denoised.{nii,nii.gz}
versions	file	File containing software versions	versions.yml

Tools

	Description	Homepage	DOI
scilpy	The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox.	https://github.com/scilus/scilpy.git

Authors

@scilus