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mppca

Module: denoising/mppca

denoise a dataset with the Marchenko-Pastur principal component analysis

Inputs

TypeDescriptionMandatoryPattern
metamapGroovy Map containing sample information e.g. [ id:'test', single_end:false ]true
dwifileNifti dwi file to denoisetrue*.{nii,nii.gz}
maskfileNifti mask file for the dwifalse*.{nii,nii.gz}

Outputs

TypeDescriptionPattern
metamapGroovy Map containing sample information e.g. [ id:'test', single_end:false ]
imagefileDenoised Nifti image file*_dwi_denoised.{nii,nii.gz}
versionsfileFile containing software versionsversions.yml

Tools

DescriptionHomepageDOI
MRtrix3Toolbox for image processing, analysis and visualisation of dMRI.https://mrtrix.readthedocs.io/en/latest/

Authors

@scilus