bundle_centroid
Compute bundles’ centroids or resample existing centroids.
Keywords : Bundles, Centroids, Streamlines
Inputs
Section titled “Inputs”Input 1
Section titled “Input 1”Format : tuple val(meta), path(bundles)
| Type | Description | Mandatory | Pattern | |
|---|---|---|---|---|
| meta | map | Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ] | True | |
| bundles | file | List of bundles to compute centroids for. | True | *.trk |
Outputs
Section titled “Outputs”centroids
Section titled “centroids”Format : tuple val(meta), path(*_centroid_*.trk)
| Type | Description | Mandatory | Pattern | |
|---|---|---|---|---|
| meta | map | Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ] | True | |
| centroid.trk | file | Computed centroids. | True | *_centroid_*.trk |
versions
Section titled “versions”Format : path(versions.yml)
| Type | Description | Mandatory | Pattern | |
|---|---|---|---|---|
| versions.yml | file | File containing software versions | True | versions.yml |
Arguments (see process.ext)
Section titled “Arguments (see process.ext)”| Type | Description | Default | Choices | |
|---|---|---|---|---|
| nb_points | int | Number of points to resample the centroids to. | 5 |
| Description | DOI | |
|---|---|---|
| scilpy | The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox. |
Authors
Section titled “Authors”Last updated : 2025-10-30