io_nii2dcm
Convert NIfTI files to DICOM format.
Keywords : NIfTI, DICOM, Conversion
Inputs
Section titled “Inputs”Input 1
Section titled “Input 1”Format : tuple val(meta), val(niftis), path(dicom)
| Type | Description | Mandatory | Pattern | |
|---|---|---|---|---|
| meta | map | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] | True | |
| niftis | list | NIfTI files to be converted to DICOM format | True | *.{nii,nii.gz} |
| dicom | file | Reference DICOM file (optional) | True | *.dcm |
Outputs
Section titled “Outputs”dicom_directory
Section titled “dicom_directory”Format : tuple val(meta), path(DICOM/)
| Type | Description | Mandatory | Pattern | |
|---|---|---|---|---|
| meta | map | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] | True | |
| DICOM/ | directory | Directory containing the DICOM files | True | DICOM/ |
versions
Section titled “versions”Format : path(versions.yml)
| Type | Description | Mandatory | Pattern | |
|---|---|---|---|---|
| versions.yml | file | File containing software versions | True | versions.yml |
| Description | DOI | |
|---|---|---|
| MRtrix3 | MRtrix3 is a software package for various types of diffusion imaging data, including diffusion-weighted, diffusion-tensor, and q-ball imaging. | 10.1016/j.neuroimage.2019.116137 |
| nii2dcm | A tool to convert NIfTI files to DICOM format. |
Authors
Section titled “Authors”Last updated : 2025-10-30