n4

Module: preproc/n4

Bias field correction using N4

Inputs

	Type	Description	Mandatory	Pattern
meta	map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]	true
image	file	Nifti image file to correct		*.{nii,nii.gz}
ref	file	Nifti image file for the reference		*.{nii,nii.gz}
ref_mask	file	Nifti image file mask for the reference		*.{nii,nii.gz}

Outputs

	Type	Description	Pattern
meta	map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
image	file	N4 corrected image	*.{nii,nii.gz}
versions	file	File containing software versions	versions.yml

Tools

	Description	Homepage	DOI
scilpy	The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox.	https://github.com/scilus/scilpy.git

Authors

@arnaudbore