extractb0

Module: utils/extractb0

Extract a b0 volume from a DWI image.

Inputs

	Type	Description	Mandatory	Pattern
meta	map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]	true
dwi	file	Nifti DWI volume to perform BET + crop.		*.{nii,nii.gz}
bval	file	B-values in FSL format.		*.bval
bvec	file	B-vectors in FSL format.		*.bvec

Outputs

	Type	Description	Pattern
meta	map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
b0	file	b0 image(s) extracted from the DWI	_b0.{nii,nii.gz}
versions	file	File containing software versions	versions.yml

Tools

	Description	Homepage	DOI
Scilpy	The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox.	https://github.com/scilus/scilpy.git

Authors

@AlexVCaron