extractb0
Module: utils/extractb0
Extract a b0 volume from a DWI image.
Keywords : dwi, extract, b0
Inputs
| Type | Description | Mandatory | Pattern | |
|---|---|---|---|---|
| meta | map | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] | true | |
| dwi | file | Nifti DWI volume to perform BET + crop. | *.{nii,nii.gz} | |
| bval | file | B-values in FSL format. | *.bval | |
| bvec | file | B-vectors in FSL format. | *.bvec |
Outputs
| Type | Description | Pattern | |
|---|---|---|---|
| meta | map | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] | |
| b0 | file | b0 image(s) extracted from the DWI | _b0.{nii,nii.gz} |
| versions | file | File containing software versions | versions.yml |
Tools
| Description | DOI | |
|---|---|---|
| Scilpy | The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox. |
Authors
Last updated : 2025-07-15