image_resample
Resample image to match the resolution of a reference or to the resolution specified in argument. Needs either one of voxel_size, volume_size, iso_min or reference as parameter/input. Uses linear interpolation by default.
Keywords : resample, nifti, volume, scilpy
Inputs
Section titled “Inputs”Input 1
Section titled “Input 1”Format : tuple val(meta), path(image), path(ref)
| Type | Description | Mandatory | Pattern | |
|---|---|---|---|---|
| meta | map | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] | True | |
| image | file | Nifti image file to resample to | True | *.{nii,nii.gz} |
| ref | file | Nifti reference image file | True | *.{nii,nii.gz} |
Outputs
Section titled “Outputs”Format : tuple val(meta), path(*_resampled.nii.gz)
| Type | Description | Mandatory | Pattern | |
|---|---|---|---|---|
| meta | map | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] | True | |
| *_resampled.nii.gz | file | Nifti image file resampled | True | *_resampled.{nii,nii.gz} |
versions
Section titled “versions”Format : path(versions.yml)
| Type | Description | Mandatory | Pattern | |
|---|---|---|---|---|
| versions.yml | file | File containing software versions | True | versions.yml |
| Description | DOI | |
|---|---|---|
| scilpy | The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox. |
Authors
Section titled “Authors”Last updated : 2025-10-30