resample
Module: image/resample
Script to resample a dataset to match the resolution of another reference dataset or to the resolution specified in argument. Needs either one of voxel_size, volume_size, iso_min or reference as parameter/input. Interpolation defaults as linear.
Keywords : resample, nifti, volume, scilpy
Inputs
| Type | Description | Mandatory | Pattern | |
|---|---|---|---|---|
| meta | map | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] | true | |
| image | file | Nifti image file to resample to | *.{nii,nii.gz} | |
| ref | file | Nifti reference image file | *.{nii,nii.gz} |
Outputs
| Type | Description | Pattern | |
|---|---|---|---|
| meta | map | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] | |
| image | file | Nifti image file resampled | *_resampled.{nii,nii.gz} |
| versions | file | File containing software versions | versions.yml |
Tools
| Description | DOI | |
|---|---|---|
| scilpy | The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox. |
Authors
Last updated : 2025-07-15