antsapplytransforms

Module: registration/antsapplytransforms

register image from transform

Inputs

	Type	Description	Mandatory	Pattern
meta	map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]	true
image	file	Input image to register		*.{nii.nii.gz}
reference	file	Reference image for registration		*.{nii.nii.gz}
warp	file	Warp transformation file to warp image or trk.		*.{nii,nii.gz}
affine	file	Affine or rigid transformation file to warp image or trk (*mat). If a rigid or affine transformation needs to be inverted before being applied, use antsApplyTransforms with the -o Linear[inversedTransform,1], as this module does not handles it.		*.mat

Outputs

	Type	Description	Pattern
meta	map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
warped_image	file	Warped image	*.{nii.nii.gz}
mqc	file	.gif file containing quality control image for the registration process. Made for use in MultiQC report.	*.gif
versions	file	File containing software versions	versions.yml

Tools

	Description	Homepage	DOI
ANTs	perform registration using transform as input	https://antsx.github.io/ANTsRCore/reference/antsApplyTransforms.html

Authors

@scilus