antsapplytransforms
Module: registration/antsapplytransforms
register image from transform
Keywords : MRI, registration, medical imaging
Inputs
| Type | Description | Mandatory | Pattern | |
|---|---|---|---|---|
| meta | map | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] | true | |
| image | file | Input image to register | true | *.{nii.nii.gz} |
| reference | file | Reference image for registration | true | *.{nii.nii.gz} |
| warp | file | Warp transformation file to warp image or trk. | true | *.{nii,nii.gz} |
| affine | file | Affine or rigid transformation file to warp image or trk (*mat). If a rigid or affine transformation needs to be inverted before being applied, use antsApplyTransforms with the -o Linear[inversedTransform,1], as this module does not handles it. | true | *.mat |
Outputs
| Type | Description | Pattern | |
|---|---|---|---|
| meta | map | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] | |
| warped_image | file | Warped image | *.{nii.nii.gz} |
| mqc | file | .gif file containing quality control image for the registration process. Made for use in MultiQC report. | *.gif |
| versions | file | File containing software versions | versions.yml |
Tools
| Description | DOI | |
|---|---|---|
| ANTs | perform registration using transform as input |
Authors
Last updated : 2025-07-15