cropvolume
Module: image/cropvolume
Crop empty planes around the data in a volume
Keywords : nifti, crop, scilpy
Inputs
| Type | Description | Mandatory | Pattern | |
|---|---|---|---|---|
| meta | map | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] | true | |
| image | file | Nifti image file to crop | *.{nii,nii.gz} | |
| bounding_box | file | Input bounding box to use to crop the image | *.{pkl} |
Outputs
| Type | Description | Pattern | |
|---|---|---|---|
| meta | map | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] | |
| image | file | Cropped Nifti image file | *_cropped.{nii,nii.gz} |
| bounding_box | file | Bouding box defining the limits of the crop | *.pkl |
| versions | file | File containing software versions | versions.yml |
Tools
| Description | DOI | |
|---|---|---|
| scilpy | The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox. |
Authors
Last updated : 2025-07-15