registration_tractogram
Apply a transform to a tractogram or multiple tractograms
Keywords : Diffusion MRI, Registration, Bundles, Tractogram
Inputs
Section titled “Inputs”Input 1
Section titled “Input 1”Format : tuple val(meta), path(anat), path(transfo), path(tractogram), path(ref), path(deformation)
| Type | Description | Mandatory | Pattern | |
|---|---|---|---|---|
| meta | map | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] | True | |
| anat | file | FA nifti format as anatomical image | True | *.{nii,nii.gz} |
| transfo | file | ANTs affine transform | True | *.mat |
| tractogram | file | Tractogram or list of tractograms to register | True | *.{trk,tck} |
| ref | file | Reference anatomy for tck/vtk/fib/dpy file support (.nii or .nii.gz) (optional) | True | *.{tck,vtk,fib,dpy} |
| deformation | file | Path to the file containing a deformation field (optional) | True | *.{nii,nii.gz} |
Outputs
Section titled “Outputs”warped_tractogram
Section titled “warped_tractogram”Format : tuple val(meta), path(*__*.{trk,tck})
| Type | Description | Mandatory | Pattern | |
|---|---|---|---|---|
| meta | map | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] | True | |
| __.{trk,tck} | file | Warped tractogram(s). | True | *__*.{trk,tck} |
versions
Section titled “versions”Format : path(versions.yml)
| Type | Description | Mandatory | Pattern | |
|---|---|---|---|---|
| versions.yml | file | File containing software versions | True | versions.yml |
| Description | DOI | |
|---|---|---|
| scilpy | The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox. |
Authors
Section titled “Authors”Last updated : 2025-10-30