tractogram

Module: registration/tractogram

Apply a transform to a tractogram or multiple tractograms

Inputs

	Type	Description	Mandatory	Pattern
meta	map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]	true
anat	file	FA nifti format as anatomical image		*.{nii,nii.gz}
transfo	file	ANTs affine transform		*.mat
tractogram	file	Tractogram or list of tractograms to register		*.{trk,tck}
ref	file	Reference anatomy for tck/vtk/fib/dpy file support (.nii or .nii.gz) (optional)		*.{tck,vtk,fib,dpy}
deformation	file	Path to the file containing a deformation field (optional)		*.{nii,nii.gz}

Outputs

	Type	Description	Pattern
meta	map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
tractogram	file	Warped tractogram(s)	*.{trk,tck}
versions	file	File containing software versions	versions.yml

Tools

	Description	Homepage	DOI
scilpy	The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox.	https://github.com/scilus/scilpy.git

Authors

@scilus