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nf-neuro

Submit your subworkflow

Lint your code

Section titled “Lint your code”

Run linting on your new subworkflow, through the nf-core command line :

Terminal window
nf-core subworkflows lint <subworkflow>

and fix all errors and as many warnings as possible. If at any point you modified files outside of your subworkflow’s directory, those also need to be linted. To do so, run the following commands at the root of the repository :

Terminal window
prettier --check .
editorconfig-checker

You’ll get lists of syntax errors to fix from both commands. For prettier, you can run prettier --write . to fix most of them automatically. For editorconfig-checker, you’ll have to fix them manually.

Submit your PR

Section titled “Submit your PR”

Open a PR to the nf-neuro repository main branch. We’ll test everything, make sure it’s working and that code follows standards.

Once LGTM has been declared, wave to the maintainers and look at your hard work paying off. PR merged !