afdfixel
Module: connectivity/afdfixel
Compute the mean Apparent Fiber Density (AFD) and mean Radial fODF (radfODF) maps for every connections within a hdf5 (.h5) file.
Keywords : connectivity, AFD_Fixel, Metrics
Inputs
| Type | Description | Mandatory | Pattern | |
|---|---|---|---|---|
| meta | map | Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ] | true | |
| hdf5 | file | HDF5 file containing decomposed connections. | *.h5 | |
| fodf | file | FODF file. | *.nii.gz |
Outputs
| Type | Description | Pattern | |
|---|---|---|---|
| meta | map | Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ] | |
| hdf5 | file | HDF5 file containing the computed AFD fixel and radial fODF metrics. | *.h5 |
| versions | file | File containing software versions | versions.yml |
Tools
| Description | DOI | |
|---|---|---|
| scilpy | The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox. |
Authors
Maintainers
Last updated : 2025-07-15