math
Module: tractogram/math
This module performs mathematical operations on tractograms. It can be used to concatenate multiple tractograms into a single file, compute the union of multiple tractograms, or perform other operations. The available operations are:
- Concatenate: Combine multiple tractograms into a single file.
- Union: Compute the union of multiple tractograms.
- Intersection: Compute the intersection of multiple tractograms.
- Difference: Compute the difference between two tractograms.
- Lazy Concatenate: Concatenate multiple tractograms without loading them into memory.
Inputs
| Type | Description | Mandatory | Pattern | |
|---|---|---|---|---|
| meta | map | Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ] | true | |
| trks | file | List of tractograms to perform the operation on. e.g. [ path(trk1), path(trk2), path(trk3), ...] | true | *.trk |
| reference | file | Reference tractogram to use for the operation. e.g. [ path(reference) ] | false | *.{nii,nii.gz} |
Outputs
| Type | Description | Pattern | |
|---|---|---|---|
| meta | map | Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ] | |
| trk | file | Resulting tractogram after the operation. e.g. [ path(trk) ] | *.trk |
| versions | file | File containing software versions | versions.yml |
Tools
| Description | Homepage | DOI | |
|---|---|---|---|
| scilpy | The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox. | https://github.com/scilus/scilpy.git |
Authors
@gagnonanthony
Maintainers
@gagnonanthony