bundle_coloring
Assign color to bundles.
Keywords : Bundles, Coloring, Tractometry
Inputs
Section titled “Inputs”Input 1
Section titled “Input 1”Format : tuple val(meta), path(bundles)
| Type | Description | Mandatory | Pattern | |
|---|---|---|---|---|
| meta | map | Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ] | True | |
| bundles | file | Flatten list of trk files containing bundles to be colored. | True | *.trk |
Outputs
Section titled “Outputs”bundles
Section titled “bundles”Format : tuple val(meta), path(*_colored.trk)
| Type | Description | Mandatory | Pattern | |
|---|---|---|---|---|
| meta | map | Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ] | True | |
| *_colored.trk | file | Colored bundles file. | True | *_colored.trk |
versions
Section titled “versions”Format : path(versions.yml)
| Type | Description | Mandatory | Pattern | |
|---|---|---|---|---|
| versions.yml | file | File containing software versions | True | versions.yml |
Arguments (see process.ext)
Section titled “Arguments (see process.ext)”| Type | Description | Default | Choices | |
|---|---|---|---|---|
| colors | string | List of colors to be used for coloring for each bundle. Example: ext.colors = [“bundle_0”:“0xd9bd09”, “bundle_1”:“0xcc0000”] | None |
| Description | DOI | |
|---|---|---|
| scilpy | The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox. |
Authors
Section titled “Authors”Last updated : 2025-10-30