coloring
Module: bundle/coloring
Assign color to bundles.
Inputs
| Type | Description | Mandatory | Pattern | |
|---|---|---|---|---|
| meta | map | Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ] | true | |
| bundles | file | Flatten list of trk files containing bundles to be colored. | true | *.trk |
Arguments
| Type | Description | Choices | Default | |
|---|---|---|---|---|
| colors | string | List of colors to be used for coloring for each bundle. Example: ext.colors = [“bundle_0”:“0xd9bd09”, “bundle_1”:“0xcc0000”] | None |
Outputs
| Type | Description | Pattern | |
|---|---|---|---|
| meta | map | Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ] | |
| bundles | file | Colored bundles file. | *_colored.trk |
| versions | file | File containing software versions | versions.yml |
Tools
| Description | Homepage | DOI | |
|---|---|---|---|
| scilpy | The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox. | https://github.com/scilus/scilpy.git |
Authors
@gagnonanthony
Maintainers
@gagnonanthony