Module: tracking/localtracking

process local tracking

Inputs

	Type	Description	Pattern
meta	map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
wm	file	Nifti image white matter mask.	*.{nii,nii.gz}
fodf	file	Nifti image of spherical harmonic file (fodf)	*.{nii,nii.gz}
fa	file	NIfti image binary mask for fa mask	*.{nii,nii.gz}

Outputs

	Type	Description	Pattern
meta	map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
trk	file	Tractogram output file.	*.{trk,tck}
config	file	Json file containing tracking parameters.	*.{json}
seedmask	file	Nifti seeding mask for tracking.	*.{nii,nii.gz}
trackmask	file	Nifti tracking mask	*.{nii,nii.gz}
versions	file	File containing software versions	versions.yml

Tools

	Description	Homepage	DOI
scilpy	The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox.	https://github.com/scilus/scilpy.git

Keywords

Tractography
Local tracking
Diffusion MRI

Authors

@scilus