Module: image/cropvolume

Crop empty planes around the data in a volume

Inputs

	Type	Description	Pattern
meta	map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
image	file	Nifti image file to crop	*.{nii,nii.gz}
bounding_box	file	Input bounding box to use to crop the image	*.{pkl}

Outputs

	Type	Description	Pattern
meta	map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
image	file	Cropped Nifti image file	*_cropped.{nii,nii.gz}
bounding_box	file	Bouding box defining the limits of the crop	*.pkl
versions	file	File containing software versions	versions.yml

Tools

	Description	Homepage	DOI
scilpy	The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox.	https://github.com/scilus/scilpy.git

Keywords

nifti
crop
scilpy

Authors

@AlexVCaron