Module: connectivity/afdfixel

Compute the mean Apparent Fiber Density (AFD) and mean Radial fODF (radfODF) maps for every connections within a hdf5 (.h5) file.

Inputs

	Type	Description	Pattern
meta	map	Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]
hdf5	file	HDF5 file containing decomposed connections.	*.h5
fodf	file	FODF file.	*.nii.gz

Outputs

	Type	Description	Pattern
meta	map	Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]
hdf5	file	HDF5 file containing the computed AFD fixel and radial fODF metrics.	*.h5
versions	file	File containing software versions	versions.yml

Tools

	Description	Homepage	DOI
scilpy	The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox.	https://github.com/scilus/scilpy.git

Keywords

connectivity
AFD_Fixel
Metrics

Authors

@gagnonanthony

Maintainers

@gagnonanthony