Module: reconst/shmetrics
Compute FODF metrics from given FODF or SH map.
Inputs
| Type | Description | Pattern | |
|---|---|---|---|
| meta | map | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] | |
| sh | file | SH or FODF map. | *.{nii,nii.gz} |
| mask | file | B0 mask. | *.{nii,nii.gz} |
| fa | file | FA map. | *.{nii,nii.gz} |
| md | file | MD map. | *.{nii,nii.gz} |
Outputs
| Type | Description | Pattern | |
|---|---|---|---|
| meta | map | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] | |
| peaks | file | Peaks file. | *peaks.nii.gz |
| peak_indices | file | Peak indices file. | *peak_indices.nii.gz |
| afd_max | file | Maximum Apparent Fiber Density (AFDmax) map. | *afd_max.nii.gz |
| afd_total | file | Total Apparent Fiber Density (AFDtotal) map. | *afd_total.nii.gz |
| afd_sum | file | Sum of all Apparent Fiber Density (Afdsum) map. | *afd_sum.nii.gz |
| nufo | file | Number of Fiber Orientation (NuFO) map. | *nufo.nii.gz |
| vent_mask | file | Ventricles mask. | *ventricles_mask.nii.gz |
| versions | file | File containing software versions | versions.yml |
Tools
| Description | Homepage | DOI | |
|---|---|---|---|
| Scilpy | The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox. | https://github.com/scilus/scilpy.git |
Keywords
| FODF |
| SH |
| Metrics |
Authors
@karanphil