Module: denoising/mppca

denoise a dataset with the Marchenko-Pastur principal component analysis

Inputs

	Type	Description	Pattern
meta	map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
dwi	file	Nifti dwi file to denoise	*.{nii,nii.gz}
mask	file	Nifti mask file for the dwi, optional	*.{nii,nii.gz}

Outputs

	Type	Description	Pattern
meta	map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
image	file	Denoised Nifti image file	*_dwi_denoised.{nii,nii.gz}
versions	file	File containing software versions	versions.yml

Tools

	Description	Homepage	DOI
MRtrix3	Toolbox for image processing, analysis and visualisation of dMRI.	https://mrtrix.readthedocs.io/en/latest/

Keywords

nifti
denoising
mppca
mrtrix
fsl

Authors

@scilus