Module: betcrop/synthbet
Perform brain extraction using synthstrip on image
Inputs
| Type | Description | Pattern | |
|---|---|---|---|
| meta | map | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] | |
| image | file | Nifti image volume to perform BET. | *.{nii,nii.gz} |
| weights | file | Alternative model weights | *.pt |
Outputs
| Type | Description | Pattern | |
|---|---|---|---|
| meta | map | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] | |
| bet_image | file | Nifti brain-extracted volume. | *__bet_image.{nii,nii.gz} |
| brain_mask | file | Brain-extracted image mask . | *__brain_mask.{nii,nii.gz} |
| versions | file | File containing software versions | versions.yml |
Tools
| Description | Homepage | DOI | |
|---|---|---|---|
| Freesurfer | Software package for the analysis and visualization of structural and functional neuroimaging data. | https://surfer.nmr.mgh.harvard.edu/fswiki |
Keywords
| anatomical image |
| BET |
| freesurfer |
Authors
@anroy1