Module: image/resample

Script to resample a dataset to match the resolution of another reference dataset or to the resolution specified in argument. Needs either one of voxel_size, volume_size, iso_min or reference as parameter/input. Interpolation defaults as linear.

Inputs

	Type	Description	Pattern
meta	map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
image	file	Nifti image file to resample to	*.{nii,nii.gz}
ref	file	Nifti reference image file	*.{nii,nii.gz}

Outputs

	Type	Description	Pattern
meta	map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
image	file	Nifti image file resampled	*_resampled.{nii,nii.gz}
versions	file	File containing software versions	versions.yml

Tools

	Description	Homepage	DOI
scilpy	The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox.	https://github.com/scilus/scilpy.git

Keywords

resample
nifti
volume
scilpy

Authors

@scilus