Module: bundle/uniformize
Uniformize streamlines’ endpoints according to a defined axis. Useful for tractometry or models creation.
Inputs
| Type | Description | Pattern | |
|---|---|---|---|
| meta | map | Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ] | |
| bundles | file | Bundle or list of bundles to uniformize. | *.trk |
| centroids | file | Match endpoints of the streamlines to align it to a reference unique streamline (centroid). (optional) | *.trk |
Outputs
| Type | Description | Pattern | |
|---|---|---|---|
| meta | map | Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ] | |
| versions | file | File containing software versions | versions.yml |
| bundles | file | Bundle or list of bundles uniformized. | *.trk |
Tools
| Description | Homepage | DOI | |
|---|---|---|---|
| scilpy | The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox. | https://github.com/scilus/scilpy.git |
Keywords
| uniformize |
| Bundles |
| endpoints |
| tractometry |
Authors
@ThoumyreStanislas
Maintainers
@ThoumyreStanislas