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Optional Inputs
Creation documentation for your module
Test data infrastructure
Editing the template
Resources for testing
Submit your module
Generate the template
Creating test cases for your module
Environments
Devcontainers
Devops devcontainer
Production devcontainer
Prototyping devcontainer
Devops environment
Basic environment
Porting prototypes to nf-ready pipelines
Prototyping using components from nf-neuro
Create your subworkflow
Getting Started
Modules
Betcrop
Antsbet
Fslbetcrop
Synthbet
Bundle
Centroid
Coloring
Fixelafd
Labelmap
Recognize
Stats
Uniformize
Connectivity
Afdfixel
Decompose
Visualize
Denoising
Mppca
Nlmeans
Image
Applymask
Burnvoxels
Convert
Cropvolume
Powderaverage
Resample
Io
Nii2dcm
Readbids
Preproc
Eddy
Gibbs
N4
Normalize
Topup
Reconst
Diffusivitypriors
Dtimetrics
Fodf
Freewater
Frf
Ihmt
Meanfrf
Noddi
Shmetrics
Registration
Anattodwi
Ants
Antsapplytransforms
Convert
Easyreg
Synthregistration
Tractogram
Segmentation
Fastseg
Fastsurfer
Freesurferseg
Fsreconall
Synthseg
Tracking
Localtracking
Pfttracking
Tractogram
Densitymap
Removeinvalid
Resample
Utils
Extractb0
Subworkflows
Anatomical_segmentation
Bundle_seg
Io_bids
Load_test_data
Preproc_dwi
Preproc_t1
Registration
Topup_eddy
Tractoflow
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Getting Started
Guides
Environments
Devcontainers
Prototyping devcontainer
Production devcontainer
Devops devcontainer
Basic environment
Devops environment
Create Your Module
Generate the template
Editing the template
Creation documentation for your module
Creating test cases for your module
Optional Inputs
Submit your module
Test data infrastructure
Resources for testing
Create your subworkflow
Prototyping using components from nf-neuro
Porting prototypes to nf-ready pipelines
Modules
Betcrop
antsbet
fslbetcrop
synthbet
Bundle
centroid
coloring
fixelafd
labelmap
recognize
stats
uniformize
Connectivity
afdfixel
decompose
visualize
Denoising
mppca
nlmeans
Image
applymask
burnvoxels
convert
cropvolume
powderaverage
resample
Io
nii2dcm
readbids
Preproc
eddy
gibbs
n4
normalize
topup
Reconst
diffusivitypriors
dtimetrics
fodf
freewater
frf
ihmt
meanfrf
noddi
shmetrics
Registration
anattodwi
ants
antsapplytransforms
convert
easyreg
synthregistration
tractogram
Segmentation
fastseg
fastsurfer
freesurferseg
fsreconall
synthseg
Tracking
localtracking
pfttracking
Tractogram
densitymap
removeinvalid
resample
Utils
extractb0
Subworkflows
anatomical_segmentation
bundle_seg
io_bids
load_test_data
preproc_dwi
preproc_t1
registration
topup_eddy
tractoflow
Section to come