Module: image/applymask

Apply a binary mask to a 3D or 4D image.

Inputs

	Type	Description	Pattern
meta	map	Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]
image	file	3D or 4D image to apply the mask to.	*.nii.gz
mask	file	Binary mask to apply to the image.	*.nii.gz

Outputs

	Type	Description	Pattern
meta	map	Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]
image	file	Masked 3D or 4D image.	*.nii.gz
versions	file	File containing software versions	versions.yml

Tools

	Description	Homepage	DOI
MRtrix3	Toolbox for image processing, analysis and visualisation of dMRI.	https://mrtrix.readthedocs.io/en/latest/

Keywords

Image
Mask
BET

Authors

@gagnonanthony

Maintainers

@gagnonanthony