Module: registration/anattodwi
Anatomical image registration on a diffusion image.
Inputs
| Type | Description | Pattern | |
|---|---|---|---|
| meta | map | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] | |
| t1 | file | Nifti image file to register on dwi | *.{nii,nii.gz} |
| b0 | file | Nifti image file - b0 | *.{nii,nii.gz} |
| metric | file | Nifti image file metric used to register (fa) | *.{nii,nii.gz} |
Arguments
| Type | Description | Choices | Default | |
|---|---|---|---|---|
| run_qc | boolean | Run quality control for the registration process | False |
Outputs
| Type | Description | Pattern | |
|---|---|---|---|
| meta | map | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] | |
| transfo_trk | list | Tuple, Transformation files to warp tractogram/streamlines (mat file, nii InverseWarp) | *.{mat,nii,nii.gz} |
| transfo_image | list | Tuple, Transformation files to warp images (nii Warp, mat file) | *.{nii,nii.gz,mat} |
| t1_warped | file | Anatomical T1 warped to dwi space | *.{nii,nii.gz} |
| mqc | file | .gif file containing quality control image for the registration process. Made for use in MultiQC report. | *.gif |
| versions | file | File containing software versions | versions.yml |
Tools
| Description | Homepage | DOI | |
|---|---|---|---|
| antsRegistration | ANTs (Advanced Normalization Tools) open-source software package for image registration and segmentation | https://github.com/ANTsX/ANTs/wiki/Compiling-ANTs-on-Linux-and-Mac-OS | 10.1016/j.neuroimage.2010.09.025 |
Keywords
| nifti |
| registration |
| anatomical |
| dwi |
Authors
@medde