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Welcome
Create your pipeline
Setup your computer
Tutorial
Explore
Part 1-2 : Use inputs
Part 3 : Use modules
Part 4 : Install modules
Part 5 : Install subworkflows
Part 6 : Create a module
Part 7 : Create a subworkflow
How-to
Nextflow
Top-5 Operators
Custom Subworkflows
VSCode
Data in devcontainers
Nextflow support
Advanced Tutorials
BIDS Input
BIDS Output
MultiQC
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Setup your computer
Create your module
Generate the template
Edit the template
Create documentation
Create test cases
Optional Inputs
Submit your module
Test data infrastructure
Resources for testing
Create your subworkflow
Create your subworkflow
API Documentation
Categories
modules
betcrop
antsbet
fslbetcrop
synthbet
bundle
centroid
coloring
fixelafd
labelmap
recognize
stats
uniformize
connectivity
afdfixel
decompose
visualize
denoising
mppca
nlmeans
image
applymask
burnvoxels
convert
cropvolume
powderaverage
resample
io
nii2dcm
readbids
mqc
gif
preproc
eddy
gibbs
n4
normalize
topup
reconst
diffusivitypriors
dtimetrics
fodf
freewater
frf
ihmt
meanfrf
noddi
shmetrics
shsignal
registration
anattodwi
ants
antsapplytransforms
convert
easyreg
synthregistration
tractogram
segmentation
fastseg
fastsurfer
freesurferseg
fsreconall
synthseg
stats
metricsinroi
tracking
localtracking
pfttracking
tractogram
densitymap
removeinvalid
resample
utils
extractb0
subworkflows
anatomical_segmentation
bundle_seg
io_bids
load_test_data
preproc_dwi
preproc_t1
registration
topup_eddy
tractoflow
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